The Meshinchi Lab At Fred Hutch Cancer Center

Publications

Take a look at some of the publications from our lab.

Highlighted

Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk
Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk
Jenny Smith, Sean K. Maden, David Lee, Ronald Buie, Vikas Peddu, Ryan Shean, Ben Busby
bioRxiv  ·  [no date info]  ·  https://doi.org/10.1101/632166
We present a consensus machine learning approach to identify gene targets of likely importance for pediatric AML risk.
CBFA2T3-GLIS2 model of pediatric acute megakaryoblastic leukemia identifies FOLR1 as a CAR T cell target
CBFA2T3-GLIS2 model of pediatric acute megakaryoblastic leukemia identifies FOLR1 as a CAR T cell target
Quy Le, Brandon Hadland, Jenny L. Smith, Amanda Leonti, Benjamin J. Huang, …, Stanley R. Riddell, Katherine Tarlock, Irwin D. Bernstein, Keith R. Loeb, Soheil Meshinchi
The Journal of Clinical Investigation  ·  [no date info]  ·  https://doi.org/10.1172/JCI157101
Identification of FOLR1 as a CART cell target and demonstration of preclinical efficacy in vivo.
A longitudinal single-cell atlas of treatment response in pediatric AML
A longitudinal single-cell atlas of treatment response in pediatric AML
Sander Lambo, Diane L. Trinh, Rhonda E. Ries, Dan Jin, Audi Setiadi, …, Laura M. Pardo, Xiaotu Ma, Suzanne M. Vercauteren, Soheil Meshinchi, Marco A. Marra
Cancer Cell  ·  [no date info]  ·  [no id info]
We used single-cell RNA sequencing and single-cell ATAC sequencing to profile 28 patients representing different pAML subtypes at diagnosis, remission and relapse.

All

2024

Prognostic impact of cooccurring mutations in <i>FLT3</i>-ITD pediatric acute myeloid leukemia
Prognostic impact of cooccurring mutations in FLT3-ITD pediatric acute myeloid leukemia
Katherine Tarlock, Robert B. Gerbing, Rhonda E. Ries, Jenny L. Smith, Amanda Leonti, …, E. Anders Kolb, Richard Aplenc, Jessica A. Pollard, Todd A. Alonzo, Soheil Meshinchi
Blood Advances  ·  26 Apr 2024  ·  doi:10.1182/bloodadvances.2023011980

2023

Preclinical studies targeting CD74 with STRO-001 antibody-drug conjugate in acute leukemia
Preclinical studies targeting CD74 with STRO-001 antibody-drug conjugate in acute leukemia
Quy Le, Thao Tang, Amanda Leonti, Sommer Castro, Cyd Nourigat McKay, …, Lisa Eidenshinck Brodersen, Michael R. Loken, Katherine Tarlock, Soheil Meshinchi, Keith R. Loeb
Blood Advances  ·  26 Apr 2023  ·  doi:10.1182/bloodadvances.2022008303
Therapeutic targeting of PRAME with mTCRCAR T cells in acute myeloid leukemia
Therapeutic targeting of PRAME with mTCRCAR T cells in acute myeloid leukemia
Danielle C. Kirkey, Anisha M. Loeb, Sommer Castro, Cyd Nourigat McKay, LaKeisha Perkins, …, Lisa Eidenschink Brodersen, Keith R. Loeb, David A. Scheinberg, Quy Le, Soheil Meshinchi
Blood Advances  ·  31 Mar 2023  ·  doi:10.1182/bloodadvances.2022008304

2022

Targeting FOLR1 in high-risk CBF2AT3-GLIS2 pediatric AML with STRO-002 FOLR1–antibody-drug conjugate
Targeting FOLR1 in high-risk CBF2AT3-GLIS2 pediatric AML with STRO-002 FOLR1–antibody-drug conjugate
Thao Tang, Quy Le, Sommer Castro, Laura Pardo, Cyd Nourigat McKay, …, Lisa Eidenshinck Brodersen, Michael R. Loken, Katherine Tarlock, Soheil Meshinchi, Keith R. Loeb
Blood Advances  ·  22 Nov 2022  ·  doi:10.1182/bloodadvances.2022008503

2020

Comprehensive Transcriptome Profiling of Cryptic <i>CBFA2T3–GLIS2</i> Fusion–Positive AML Defines Novel Therapeutic Options: A COG and TARGET Pediatric AML Study
Comprehensive Transcriptome Profiling of Cryptic CBFA2T3–GLIS2 Fusion–Positive AML Defines Novel Therapeutic Options: A COG and TARGET Pediatric AML Study
Jenny L. Smith, Rhonda E. Ries, Tiffany Hylkema, Todd A. Alonzo, Robert B. Gerbing, …, Daoud Meerzaman, Michael R. Loken, Vivian G. Oehler, Hamid Bolouri, Soheil Meshinchi
Clinical Cancer Research  ·  01 Feb 2020  ·  doi:10.1158/1078-0432.CCR-19-1800

2019

RNAIndel: discovering somatic coding indels from tumor RNA-Seq data
RNAIndel: discovering somatic coding indels from tumor RNA-Seq data
Kohei Hagiwara, Liang Ding, Michael N Edmonson, Stephen V Rice, Scott Newman, …, Juncheng Dai, Soheil Meshinchi, Rhonda E Ries, Michael Rusch, Jinghui Zhang
Bioinformatics  ·  08 Oct 2019  ·  doi:10.1093/bioinformatics/btz753
Genomic subtyping and therapeutic targeting of acute erythroleukemia
Genomic subtyping and therapeutic targeting of acute erythroleukemia
Ilaria Iacobucci, Ji Wen, Manja Meggendorfer, John K. Choi, Lei Shi, …, Mignon L. Loh, Benjamin L. Ebert, Soheil Meshinchi, Torsten Haferlach, Charles G. Mullighan
Nature Genetics  ·  29 Mar 2019  ·  doi:10.1038/s41588-019-0375-1
Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia
Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia
Nicole A. McNeer, John Philip, Heather Geiger, Rhonda E. Ries, Vincent-Philippe Lavallée, …, Malcolm Smith, Daniela Se Gerhard, Jaime Guidry-Auvil, Soheil Meshinchi, Alex Kentsis
Leukemia  ·  13 Feb 2019  ·  doi:10.1038/s41375-019-0402-3

2018

Prognostic impact of t(16;21)(p11;q22) and t(16;21)(q24;q22) in pediatric AML: a retrospective study by the I-BFM Study Group
Prognostic impact of t(16;21)(p11;q22) and t(16;21)(q24;q22) in pediatric AML: a retrospective study by the I-BFM Study Group
Sanne Noort, Martin Zimmermann, Dirk Reinhardt, Wendy Cuccuini, Martina Pigazzi, …, Barbara De Moerloose, Henrik Hasle, Soheil Meshinchi, Marry van den Heuvel-Eibrink, C. Michel Zwaan
Blood  ·  11 Oct 2018  ·  doi:10.1182/blood-2018-05-849059
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Xiaotu Ma, Yu Liu, Yanling Liu, Ludmil B. Alexandrov, Michael N. Edmonson, …, John M. Maris, Soheil Meshinchi, Stephen P. Hunger, Daniela S. Gerhard, Jinghui Zhang
Nature  ·  28 Feb 2018  ·  doi:10.1038/nature25795

2017

MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia
MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia
Emilia L. Lim, Diane L. Trinh, Rhonda E. Ries, Jim Wang, Robert B. Gerbing, …, Malcolm Smith, Daniela S. Gerhard, Todd A. Alonzo, Soheil Meshinchi, Marco A. Marra
Journal of Clinical Oncology  ·  10 Dec 2017  ·  doi:10.1200/jco.2017.74.7451
CD33 Splicing Polymorphism Determines Gemtuzumab Ozogamicin Response in De Novo Acute Myeloid Leukemia: Report From Randomized Phase III Children’s Oncology Group Trial AAML0531
CD33 Splicing Polymorphism Determines Gemtuzumab Ozogamicin Response in De Novo Acute Myeloid Leukemia: Report From Randomized Phase III Children’s Oncology Group Trial AAML0531
Jatinder K. Lamba, Lata Chauhan, Miyoung Shin, Michael R. Loken, Jessica A. Pollard, …, Roland B. Walter, Irwin D. Bernstein, Alan S. Gamis, Todd A. Alonzo, Soheil Meshinchi
Journal of Clinical Oncology  ·  10 Aug 2017  ·  doi:10.1200/jco.2016.71.2513
Disease Characteristics and Prognostic Implications of Cell-Surface FLT3 Receptor (CD135) Expression in Pediatric Acute Myeloid Leukemia: A Report from the Children's Oncology Group
Disease Characteristics and Prognostic Implications of Cell-Surface FLT3 Receptor (CD135) Expression in Pediatric Acute Myeloid Leukemia: A Report from the Children's Oncology Group
Katherine Tarlock, Todd A. Alonzo, Michael R. Loken, Robert B. Gerbing, Rhonda E. Ries, …, Samir B. Kahwash, Amy McKenney, E. Anders Kolb, Alan S. Gamis, Soheil Meshinchi
Clinical Cancer Research  ·  13 Jul 2017  ·  doi:10.1158/1078-0432.ccr-16-2353
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
Hamid Bolouri, Jason E. Farrar, Timothy Triche, Rhonda E. Ries, Emilia L. Lim, …, E. Anders Kolb, Alan S. Gamis, Malcolm A. Smith, Daniela S. Gerhard, Soheil Meshinchi
Cold Spring Harbor Laboratory  ·  13 Jun 2017  ·  doi:10.1101/125609
Genomic architecture and treatment outcome in pediatric acute myeloid leukemia: a Children’s Oncology Group report
Genomic architecture and treatment outcome in pediatric acute myeloid leukemia: a Children’s Oncology Group report
Marijana Vujkovic, Edward F. Attiyeh, Rhonda E. Ries, Elizabeth K. Goodman, Yang Ding, …, Betsy Hirsch, Susana Raimondi, Alan S. Gamis, Soheil Meshinchi, Richard Aplenc
Blood  ·  08 Jun 2017  ·  doi:10.1182/blood-2017-03-772384

2016

CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AML
CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AML
Julia E. Maxson, Rhonda E. Ries, Yi-Cheng Wang, Robert B. Gerbing, E. Anders Kolb, …, Malcolm A. Smith, Daniela S. Gerhard, Alan S. Gamis, Todd A. Alonzo, Soheil Meshinchi
Blood  ·  16 Jun 2016  ·  doi:10.1182/blood-2016-04-709899
Expression and functional characterization of CD33 transcript variants in human acute myeloid leukemia
Expression and functional characterization of CD33 transcript variants in human acute myeloid leukemia
George S. Laszlo, Kimberly H. Harrington, Chelsea J. Gudgeon, Mary E. Beddoe, Matthew P. Fitzgibbon, Rhonda E. Ries, Jatinder K. Lamba, Martin W. McIntosh, Soheil Meshinchi, Roland B. Walter
Oncotarget  ·  27 May 2016  ·  doi:10.18632/oncotarget.9674
Genomic Profiling of Pediatric Acute Myeloid Leukemia Reveals a Changing Mutational Landscape from Disease Diagnosis to Relapse
Genomic Profiling of Pediatric Acute Myeloid Leukemia Reveals a Changing Mutational Landscape from Disease Diagnosis to Relapse
Jason E. Farrar, Heather L. Schuback, Rhonda E. Ries, Daniel Wai, Oliver A. Hampton, …, Alan S. Gamis, David A. Wheeler, Malcolm A. Smith, Daniela S. Gerhard, Soheil Meshinchi
Cancer Research  ·  14 Apr 2016  ·  doi:10.1158/0008-5472.can-15-1015

2015

High expression of myocyte enhancer factor 2C (MEF2C) is associated with adverse-risk features and poor outcome in pediatric acute myeloid leukemia: a report from the Children’s Oncology Group
High expression of myocyte enhancer factor 2C (MEF2C) is associated with adverse-risk features and poor outcome in pediatric acute myeloid leukemia: a report from the Children’s Oncology Group
George S. Laszlo, Todd A. Alonzo, Chelsea J. Gudgeon, Kimberly H. Harrington, Alex Kentsis, …, Susana C. Raimondi, Betsy A. Hirsch, Alan S. Gamis, Soheil Meshinchi, Roland B. Walter
Journal of Hematology & Oncology  ·  20 Oct 2015  ·  doi:10.1186/s13045-015-0215-4
Transcriptome Profiling of Pediatric Core Binding Factor AML
Transcriptome Profiling of Pediatric Core Binding Factor AML
Chih-Hao Hsu, Cu Nguyen, Chunhua Yan, Rhonda E. Ries, Qing-Rong Chen, …, Derek L. Stirewalt, George Komatsoulis, Shawn Levy, Daoud Meerzaman, Soheil Meshinchi
PLOS ONE  ·  23 Sep 2015  ·  doi:10.1371/journal.pone.0138782
Multimerin-1 (<i>MMRN1</i>) as Novel Adverse Marker in Pediatric Acute Myeloid Leukemia: A Report from the Children's Oncology Group
Multimerin-1 (MMRN1) as Novel Adverse Marker in Pediatric Acute Myeloid Leukemia: A Report from the Children's Oncology Group
George S. Laszlo, Todd A. Alonzo, Chelsea J. Gudgeon, Kimberly H. Harrington, Robert B. Gerbing, …, Susana C. Raimondi, Betsy A. Hirsch, Alan S. Gamis, Soheil Meshinchi, Roland B. Walter
Clinical Cancer Research  ·  14 Jul 2015  ·  doi:10.1158/1078-0432.ccr-14-2684
Concordance of copy number alterations using a common analytic pipeline for genome-wide analysis of Illumina and Affymetrix genotyping data: a report from the Children's Oncology Group
Concordance of copy number alterations using a common analytic pipeline for genome-wide analysis of Illumina and Affymetrix genotyping data: a report from the Children's Oncology Group
Marijana Vujkovic, Edward F. Attiyeh, Rhonda E. Ries, Michelle Horn, Elizabeth K. Goodman, …, Betsy Hirsch, Susana Raimondi, Alan S. Gamis, Soheil Meshinchi, Richard Aplenc
Cancer Genetics  ·  01 Jul 2015  ·  doi:10.1016/j.cancergen.2015.04.010

2014

Sample processing obscures cancer-specific alterations in leukemic transcriptomes
Sample processing obscures cancer-specific alterations in leukemic transcriptomes
Heidi Dvinge, Rhonda E. Ries, Janine O. Ilagan, Derek L. Stirewalt, Soheil Meshinchi, Robert K. Bradley
Proceedings of the National Academy of Sciences  ·  10 Nov 2014  ·  doi:10.1073/pnas.1413374111
High expression of suppressor of cytokine signaling-2 predicts poor outcome in pediatric acute myeloid leukemia: a report from the Children's Oncology Group
High expression of suppressor of cytokine signaling-2 predicts poor outcome in pediatric acute myeloid leukemia: a report from the Children's Oncology Group
George S. Laszlo, Rhonda E. Ries, Chelsea J. Gudgeon, Kimberly H. Harrington, Todd A. Alonzo, …, Susana C. Raimondi, Betsy A. Hirsch, Alan S. Gamis, Soheil Meshinchi, Roland B. Walter
Leukemia & Lymphoma  ·  24 Mar 2014  ·  doi:10.3109/10428194.2014.893305

2013

Significance of expression of ITGA5 and its splice variants in acute myeloid leukemia: A report from the children's oncology group
Significance of expression of ITGA5 and its splice variants in acute myeloid leukemia: A report from the children's oncology group
Roland B. Walter, George S. Laszlo, Todd A. Alonzo, Robert B. Gerbing, Shawn Levy, …, Susana C. Raimondi, Betsy A. Hirsch, Alan S. Gamis, Martin W. McIntosh, Soheil Meshinchi
American Journal of Hematology  ·  20 Jun 2013  ·  doi:10.1002/ajh.23486

2011

Prognostic implications of the IDH1 synonymous SNP rs11554137 in pediatric and adult AML: a report from the Children's Oncology Group and SWOG
Prognostic implications of the IDH1 synonymous SNP rs11554137 in pediatric and adult AML: a report from the Children's Oncology Group and SWOG
Phoenix A. Ho, Kenneth J. Kopecky, Todd A. Alonzo, Robert B. Gerbing, Kristen L. Miller, …, Irwin D. Bernstein, Jerald P. Radich, Frederick R. Appelbaum, Derek L. Stirewalt, Soheil Meshinchi
Blood  ·  27 Oct 2011  ·  doi:10.1182/blood-2011-04-348888
Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression
Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression
Lukas D. Wartman, David E. Larson, Zhifu Xiang, Li Ding, Ken Chen, …, Timothy A. Graubert, Michael H. Tomasson, Elaine R. Mardis, Richard K. Wilson, Timothy J. Ley
Journal of Clinical Investigation  ·  01 Apr 2011  ·  doi:10.1172/jci45284

2009

Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome
Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome
Elaine R. Mardis, Li Ding, David J. Dooling, David E. Larson, Michael D. McLellan, …, Matthew J. Walter, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson, Timothy J. Ley
New England Journal of Medicine  ·  10 Sep 2009  ·  doi:10.1056/nejmoa0903840
Acquired copy number alterations in adult acute myeloid leukemia genomes
Acquired copy number alterations in adult acute myeloid leukemia genomes
Matthew J. Walter, Jacqueline E. Payton, Rhonda E. Ries, William D. Shannon, Hrishikesh Deshmukh, …, Elaine R. Mardis, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Timothy J. Ley
Proceedings of the National Academy of Sciences  ·  04 Aug 2009  ·  doi:10.1073/pnas.0903091106

2008

DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
Timothy J. Ley, Elaine R. Mardis, Li Ding, Bob Fulton, Michael D. McLellan, …, Matthew J. Walter, Daniel C. Link, Timothy A. Graubert, John F. DiPersio, Richard K. Wilson
Nature  ·  01 Nov 2008  ·  doi:10.1038/nature07485
Identification of somatic JAK1 mutations in patients with acute myeloid leukemia
Identification of somatic JAK1 mutations in patients with acute myeloid leukemia
Zhifu Xiang, Yu Zhao, Vesselin Mitaksov, Daved H. Fremont, Yumi Kasai, …, Rakesh Nagarajan, Elaine R. Mardis, Richard K. Wilson, Timothy J. Ley, Michael H. Tomasson
Blood  ·  01 May 2008  ·  doi:10.1182/blood-2007-05-090308
Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia
Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia
Michael H. Tomasson, Zhifu Xiang, Richard Walgren, Yu Zhao, Yumi Kasai, …, Rakesh Nagarajan, Clara D. Bloomfield, Elaine R. Mardis, Richard K. Wilson, Timothy J. Ley
Blood  ·  01 May 2008  ·  doi:10.1182/blood-2007-09-113027

2007

Distinct patterns of mutations occurring in de novo AML versus AML arising in the setting of severe congenital neutropenia
Distinct patterns of mutations occurring in de novo AML versus AML arising in the setting of severe congenital neutropenia
Daniel C. Link, Ghada Kunter, Yumi Kasai, Yu Zhao, Tracie Miner, …, William Shannon, Jack Baty, Elaine R. Mardis, Richard K. Wilson, Timothy J. Ley
Blood  ·  01 Sep 2007  ·  doi:10.1182/blood-2007-03-081216

2006

Expression of a bcr-1 isoform of RARα-PML does not affect the penetrance of acute promyelocytic leukemia or the acquisition of an interstitial deletion on mouse chromosome 2
Expression of a bcr-1 isoform of RARα-PML does not affect the penetrance of acute promyelocytic leukemia or the acquisition of an interstitial deletion on mouse chromosome 2
Matthew J. Walter, Rhonda E. Ries, Jon R. Armstrong, John S. Park, Elaine R. Mardis, Timothy J. Ley
Blood  ·  28 Sep 2006  ·  doi:10.1182/blood-2006-07-037465

2005

Reduced<i>PU.1</i>expression causes myeloid progenitor expansion and increased leukemia penetrance in mice expressing PML-RARα
ReducedPU.1expression causes myeloid progenitor expansion and increased leukemia penetrance in mice expressing PML-RARα
Matthew J. Walter, John S. Park, Rhonda E. Ries, Steven K. M. Lau, Michael McLellan, Sara Jaeger, Richard K. Wilson, Elaine R. Mardis, Timothy J. Ley
Proceedings of the National Academy of Sciences  ·  19 Aug 2005  ·  doi:10.1073/pnas.0504247102

2003

A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes
A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes
Timothy J. Ley, Patrick J. Minx, Matthew J. Walter, Rhonda E. Ries, Hui Sun, …, Michael A. Caligiuri, Clara D. Bloomfield, Jeffrey D. Milbrandt, Elaine R. Mardis, Richard K. Wilson
Proceedings of the National Academy of Sciences  ·  12 Nov 2003  ·  doi:10.1073/pnas.2335924100

FLT3, RAS, and TP53 mutations in elderly patients with acute myeloid leukemia
FLT3, RAS, and TP53 mutations in elderly patients with acute myeloid leukemia
Derek L. Stirewalt, Kenneth J. Kopecky, Soheil Meshinchi, Frederick R. Appelbaum, Marilyn L. Slovak, Cheryl L. Willman, Jerald P. Radich
Blood  ·  [no date info]  ·  https://doi.org/10.1182/blood.V97.11.3589
These results indicate that mutations in FLT3, RAS, or TP53 are common in older patients with AML and are associated with specific AML phenotypes as defined by laboratory values, cytogenetics, and clinical outcomes.
citation image
[no title info]
[no publisher info]  ·  [no date info]  ·  https://doi.org/10.1016/S1470-2045(10)70090-5
We sought to improve outcome in patients with childhood acute myeloid leukaemia (AML) by applying risk-directed therapy that was based on genetic abnormalities of the leukaemic cells and measurements of minimal residual disease (MRD) done by flow cytometry during treatment.
Diagnosis and management of acute myeloid leukemia in children and adolescents: recommendations from an international expert panel
Diagnosis and management of acute myeloid leukemia in children and adolescents: recommendations from an international expert panel
Ursula Creutzig, Marry M. Van Den Heuvel-Eibrink, Brenda Gibson, Michael N. Dworzak, Souichi Adachi, …, Lillian Sung, Jan Stary, Christian M. Zwaan, Gertjan J. L. Kaspers, Dirk Reinhardt
Blood  ·  [no date info]  ·  https://doi.org/10.1182/blood-2012-03-362608
This paper aims to discuss differences between childhood and adult AML, and to highlight recommendations that are specific to children.
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
Hamid Bolouri, Jason E. Farrar, Timothy Triche, Rhonda E. Ries, Emilia L. Lim, …, E. Anders Kolb, Alan S. Gamis, Malcolm A. Smith, Daniela S. Gerhard, Soheil Meshinchi
Nature Medicine  ·  [no date info]  ·  https://doi.org/10.1038/nm.4439
We present the molecular landscape of pediatric acute myeloid leukemia (AML) and characterize nearly 1,000 participants in Children’s Oncology Group (COG) AML trials.
Prevalence and prognostic significance of Flt3 internal tandem duplication in pediatric acute myeloid leukemia
Prevalence and prognostic significance of Flt3 internal tandem duplication in pediatric acute myeloid leukemia
Soheil Meshinchi, William G. Woods, Derek L. Stirewalt, David A. Sweetser, Jonathan D. Buckley, Thomas K. Tjoa, Irwin D. Bernstein, Jerald P. Radich
Blood  ·  [no date info]  ·  https://doi.org/10.1182/blood.V97.1.89
Multivariate analysis demonstrated that presence of the Flt3/ITD was the single most significant, independent prognostic factor for poor outcome (P = .009) in pediatric AML.
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Xiaotu Ma, Yu Liu, Yanling Liu, Ludmil B. Alexandrov, Michael N. Edmonson, …, John M. Maris, Soheil Meshinchi, Stephen P. Hunger, Daniela S. Gerhard, Jinghui Zhang
Nature  ·  [no date info]  ·  https://doi.org/10.1038/nature25795
Here we present a pan-cancer study of somatic alterations, including single nucleotide variants, small insertions or deletions, structural variations, copy number alterations, gene fusions and internal tandem duplications in 1,699 paediatric leukaemias and solid tumours across six histotypes, with whole-genome, whole-exome and transcriptome sequencing data processed under a uniform analytical framework.
Biology, Risk Stratification, and Therapy of Pediatric Acute Leukemias: An Update
Biology, Risk Stratification, and Therapy of Pediatric Acute Leukemias: An Update
Ching-Hon Pui, William L. Carroll, Soheil Meshinchi, Robert J. Arceci
Journal of Clinical Oncology  ·  [no date info]  ·  https://doi.org/10.1200/JCO.2010.30.7405
We review recent advances in the biologic understanding and treatment of childhood acute lymphoblastic leukemia (ALL) and acute myeloid leukemia (AML), identify therapeutically challenging subgroups, and suggest future directions of research.
A longitudinal single-cell atlas of treatment response in pediatric AML
A longitudinal single-cell atlas of treatment response in pediatric AML
Sander Lambo, Diane L. Trinh, Rhonda E. Ries, Dan Jin, Audi Setiadi, …, Laura M. Pardo, Xiaotu Ma, Suzanne M. Vercauteren, Soheil Meshinchi, Marco A. Marra
Cancer Cell  ·  [no date info]  ·  [no id info]
We used single-cell RNA sequencing and single-cell ATAC sequencing to profile 28 patients representing different pAML subtypes at diagnosis, remission and relapse.
CBFA2T3-GLIS2 model of pediatric acute megakaryoblastic leukemia identifies FOLR1 as a CAR T cell target
CBFA2T3-GLIS2 model of pediatric acute megakaryoblastic leukemia identifies FOLR1 as a CAR T cell target
Quy Le, Brandon Hadland, Jenny L. Smith, Amanda Leonti, Benjamin J. Huang, …, Stanley R. Riddell, Katherine Tarlock, Irwin D. Bernstein, Keith R. Loeb, Soheil Meshinchi
The Journal of Clinical Investigation  ·  [no date info]  ·  https://doi.org/10.1172/JCI157101
Identification of FOLR1 as a CART cell target and demonstration of preclinical efficacy in vivo.
Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk
Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk
Jenny Smith, Sean K. Maden, David Lee, Ronald Buie, Vikas Peddu, Ryan Shean, Ben Busby
bioRxiv  ·  [no date info]  ·  https://doi.org/10.1101/632166
We present a consensus machine learning approach to identify gene targets of likely importance for pediatric AML risk.