Publications
Take a look at some of the publications from our lab.
Highlighted
Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk
bioRxiv
·
[no date info]
·
https://doi.org/10.1101/632166
We present a consensus machine learning approach to identify gene targets of likely importance for pediatric AML risk.
CBFA2T3-GLIS2 model of pediatric acute megakaryoblastic leukemia identifies FOLR1 as a CAR T cell target
The Journal of Clinical Investigation
·
[no date info]
·
https://doi.org/10.1172/JCI157101
Identification of FOLR1 as a CART cell target and demonstration of preclinical efficacy in vivo.
A longitudinal single-cell atlas of treatment response in pediatric AML
Cancer Cell
·
[no date info]
·
[no id info]
We used single-cell RNA sequencing and single-cell ATAC sequencing to profile 28 patients representing different pAML subtypes at diagnosis, remission and relapse.
All
2024
Prognostic impact of cooccurring mutations in FLT3-ITD pediatric acute myeloid leukemia
Blood Advances
·
26 Apr 2024
·
doi:10.1182/bloodadvances.2023011980
2023
Preclinical studies targeting CD74 with STRO-001 antibody-drug conjugate in acute leukemia
Blood Advances
·
26 Apr 2023
·
doi:10.1182/bloodadvances.2022008303
Therapeutic targeting of PRAME with mTCRCAR T cells in acute myeloid leukemia
Blood Advances
·
31 Mar 2023
·
doi:10.1182/bloodadvances.2022008304
2022
Targeting FOLR1 in high-risk CBF2AT3-GLIS2 pediatric AML with STRO-002 FOLR1–antibody-drug conjugate
Blood Advances
·
22 Nov 2022
·
doi:10.1182/bloodadvances.2022008503
2020
Comprehensive Transcriptome Profiling of Cryptic CBFA2T3–GLIS2 Fusion–Positive AML Defines Novel Therapeutic Options: A COG and TARGET Pediatric AML Study
Clinical Cancer Research
·
01 Feb 2020
·
doi:10.1158/1078-0432.CCR-19-1800
2019
RNAIndel: discovering somatic coding indels from tumor RNA-Seq data
Bioinformatics
·
08 Oct 2019
·
doi:10.1093/bioinformatics/btz753
Genomic subtyping and therapeutic targeting of acute erythroleukemia
Nature Genetics
·
29 Mar 2019
·
doi:10.1038/s41588-019-0375-1
Genetic mechanisms of primary chemotherapy resistance in pediatric acute myeloid leukemia
Leukemia
·
13 Feb 2019
·
doi:10.1038/s41375-019-0402-3
2018
Prognostic impact of t(16;21)(p11;q22) and t(16;21)(q24;q22) in pediatric AML: a retrospective study by the I-BFM Study Group
Blood
·
11 Oct 2018
·
doi:10.1182/blood-2018-05-849059
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Nature
·
28 Feb 2018
·
doi:10.1038/nature25795
2017
MicroRNA Expression-Based Model Indicates Event-Free Survival in Pediatric Acute Myeloid Leukemia
Journal of Clinical Oncology
·
10 Dec 2017
·
doi:10.1200/jco.2017.74.7451
CD33 Splicing Polymorphism Determines Gemtuzumab Ozogamicin Response in De Novo Acute Myeloid Leukemia: Report From Randomized Phase III Children’s Oncology Group Trial AAML0531
Journal of Clinical Oncology
·
10 Aug 2017
·
doi:10.1200/jco.2016.71.2513
Disease Characteristics and Prognostic Implications of Cell-Surface FLT3 Receptor (CD135) Expression in Pediatric Acute Myeloid Leukemia: A Report from the Children's Oncology Group
Clinical Cancer Research
·
13 Jul 2017
·
doi:10.1158/1078-0432.ccr-16-2353
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
Cold Spring Harbor Laboratory
·
13 Jun 2017
·
doi:10.1101/125609
Genomic architecture and treatment outcome in pediatric acute myeloid leukemia: a Children’s Oncology Group report
Blood
·
08 Jun 2017
·
doi:10.1182/blood-2017-03-772384
2016
CSF3R mutations have a high degree of overlap with CEBPA mutations in pediatric AML
Blood
·
16 Jun 2016
·
doi:10.1182/blood-2016-04-709899
Expression and functional characterization of CD33 transcript variants in human acute myeloid leukemia
Oncotarget
·
27 May 2016
·
doi:10.18632/oncotarget.9674
Genomic Profiling of Pediatric Acute Myeloid Leukemia Reveals a Changing Mutational Landscape from Disease Diagnosis to Relapse
Cancer Research
·
14 Apr 2016
·
doi:10.1158/0008-5472.can-15-1015
2015
High expression of myocyte enhancer factor 2C (MEF2C) is associated with adverse-risk features and poor outcome in pediatric acute myeloid leukemia: a report from the Children’s Oncology Group
Journal of Hematology & Oncology
·
20 Oct 2015
·
doi:10.1186/s13045-015-0215-4
Transcriptome Profiling of Pediatric Core Binding Factor AML
PLOS ONE
·
23 Sep 2015
·
doi:10.1371/journal.pone.0138782
Multimerin-1 (MMRN1) as Novel Adverse Marker in Pediatric Acute Myeloid Leukemia: A Report from the Children's Oncology Group
Clinical Cancer Research
·
14 Jul 2015
·
doi:10.1158/1078-0432.ccr-14-2684
Concordance of copy number alterations using a common analytic pipeline for genome-wide analysis of Illumina and Affymetrix genotyping data: a report from the Children's Oncology Group
Cancer Genetics
·
01 Jul 2015
·
doi:10.1016/j.cancergen.2015.04.010
2014
Sample processing obscures cancer-specific alterations in leukemic transcriptomes
Proceedings of the National Academy of Sciences
·
10 Nov 2014
·
doi:10.1073/pnas.1413374111
High expression of suppressor of cytokine signaling-2 predicts poor outcome in pediatric acute myeloid leukemia: a report from the Children's Oncology Group
Leukemia & Lymphoma
·
24 Mar 2014
·
doi:10.3109/10428194.2014.893305
2013
Significance of expression of ITGA5 and its splice variants in acute myeloid leukemia: A report from the children's oncology group
American Journal of Hematology
·
20 Jun 2013
·
doi:10.1002/ajh.23486
2011
Prognostic implications of the IDH1 synonymous SNP rs11554137 in pediatric and adult AML: a report from the Children's Oncology Group and SWOG
Blood
·
27 Oct 2011
·
doi:10.1182/blood-2011-04-348888
Sequencing a mouse acute promyelocytic leukemia genome reveals genetic events relevant for disease progression
Journal of Clinical Investigation
·
01 Apr 2011
·
doi:10.1172/jci45284
2009
Recurring Mutations Found by Sequencing an Acute Myeloid Leukemia Genome
New England Journal of Medicine
·
10 Sep 2009
·
doi:10.1056/nejmoa0903840
Acquired copy number alterations in adult acute myeloid leukemia genomes
Proceedings of the National Academy of Sciences
·
04 Aug 2009
·
doi:10.1073/pnas.0903091106
2008
DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome
Nature
·
01 Nov 2008
·
doi:10.1038/nature07485
Identification of somatic JAK1 mutations in patients with acute myeloid leukemia
Blood
·
01 May 2008
·
doi:10.1182/blood-2007-05-090308
Somatic mutations and germline sequence variants in the expressed tyrosine kinase genes of patients with de novo acute myeloid leukemia
Blood
·
01 May 2008
·
doi:10.1182/blood-2007-09-113027
2007
Distinct patterns of mutations occurring in de novo AML versus AML arising in the setting of severe congenital neutropenia
Blood
·
01 Sep 2007
·
doi:10.1182/blood-2007-03-081216
2006
Expression of a bcr-1 isoform of RARα-PML does not affect the penetrance of acute promyelocytic leukemia or the acquisition of an interstitial deletion on mouse chromosome 2
Blood
·
28 Sep 2006
·
doi:10.1182/blood-2006-07-037465
2005
ReducedPU.1expression causes myeloid progenitor expansion and increased leukemia penetrance in mice expressing PML-RARα
Proceedings of the National Academy of Sciences
·
19 Aug 2005
·
doi:10.1073/pnas.0504247102
2003
A pilot study of high-throughput, sequence-based mutational profiling of primary human acute myeloid leukemia cell genomes
Proceedings of the National Academy of Sciences
·
12 Nov 2003
·
doi:10.1073/pnas.2335924100
FLT3, RAS, and TP53 mutations in elderly patients with acute myeloid leukemia
Blood
·
[no date info]
·
https://doi.org/10.1182/blood.V97.11.3589
These results indicate that mutations in FLT3, RAS, or TP53 are common in older patients with AML and are associated with specific AML phenotypes as defined by laboratory values, cytogenetics, and clinical outcomes.
Minimal residual disease-directed therapy for childhood acute myeloid leukaemia: results of the AML02 multicentre trial
The Lancet Oncology
·
[no date info]
·
https://doi.org/10.1016/S1470-2045(10)70090-5
We sought to improve outcome in patients with childhood acute myeloid leukaemia (AML) by applying risk-directed therapy that was based on genetic abnormalities of the leukaemic cells and measurements of minimal residual disease (MRD) done by flow cytometry during treatment.
Diagnosis and management of acute myeloid leukemia in children and adolescents: recommendations from an international expert panel
Blood
·
[no date info]
·
https://doi.org/10.1182/blood-2012-03-362608
This paper aims to discuss differences between childhood and adult AML, and to highlight recommendations that are specific to children.
The molecular landscape of pediatric acute myeloid leukemia reveals recurrent structural alterations and age-specific mutational interactions
Nature Medicine
·
[no date info]
·
https://doi.org/10.1038/nm.4439
We present the molecular landscape of pediatric acute myeloid leukemia (AML) and characterize nearly 1,000 participants in Children’s Oncology Group (COG) AML trials.
Prevalence and prognostic significance of Flt3 internal tandem duplication in pediatric acute myeloid leukemia
Blood
·
[no date info]
·
https://doi.org/10.1182/blood.V97.1.89
Multivariate analysis demonstrated that presence of the Flt3/ITD was the single most significant, independent prognostic factor for poor outcome (P = .009) in pediatric AML.
Pan-cancer genome and transcriptome analyses of 1,699 paediatric leukaemias and solid tumours
Nature
·
[no date info]
·
https://doi.org/10.1038/nature25795
Here we present a pan-cancer study of somatic alterations, including single nucleotide variants, small insertions or deletions, structural variations, copy number alterations, gene fusions and internal tandem duplications in 1,699 paediatric leukaemias and solid tumours across six histotypes, with whole-genome, whole-exome and transcriptome sequencing data processed under a uniform analytical framework.
Biology, Risk Stratification, and Therapy of Pediatric Acute Leukemias: An Update
Journal of Clinical Oncology
·
[no date info]
·
https://doi.org/10.1200/JCO.2010.30.7405
We review recent advances in the biologic understanding and treatment of childhood acute lymphoblastic leukemia (ALL) and acute myeloid leukemia (AML), identify therapeutically challenging subgroups, and suggest future directions of research.
A longitudinal single-cell atlas of treatment response in pediatric AML
Cancer Cell
·
[no date info]
·
[no id info]
We used single-cell RNA sequencing and single-cell ATAC sequencing to profile 28 patients representing different pAML subtypes at diagnosis, remission and relapse.
CBFA2T3-GLIS2 model of pediatric acute megakaryoblastic leukemia identifies FOLR1 as a CAR T cell target
The Journal of Clinical Investigation
·
[no date info]
·
https://doi.org/10.1172/JCI157101
Identification of FOLR1 as a CART cell target and demonstration of preclinical efficacy in vivo.
Consensus Machine Learning for Gene Target Selection in Pediatric AML Risk
bioRxiv
·
[no date info]
·
https://doi.org/10.1101/632166
We present a consensus machine learning approach to identify gene targets of likely importance for pediatric AML risk.